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Table 8 Top 3 performers in the evaluation by Rogic et al., testing with HMR195.

From: A Metastate HMM with Application to Gene Structure Identification in Eukaryotes

Software name

Nucleotide level

Full-exon level

 

E[sn]

E[sp]

AC

E[(sn + sp)/2]

E[SN]

E[SP]

E[(SN + SP)/2]

Genie

0.91

0.90

0.89 ± 0.16

0.905

0.71

0.70

0.71 ± 0.30

Genscan

0.95

0.90

0.91 ± 0.12

0.925

0.70

0.70

0.70 ± 0.32

HMMgene

0.93

0.93

0.91 ± 0.13

0.93

0.76

0.77

0.76 ± 0.30