Open Access

Cluster Structure Inference Based on Clustering Stability with Applications to Microarray Data Analysis

EURASIP Journal on Advances in Signal Processing20042004:545761

https://doi.org/10.1155/S1110865704309078

Received: 28 February 2003

Published: 21 January 2004

Abstract

This paper focuses on the stability-based approach for estimating the number of clusters in microarray data. The cluster stability approach amounts to performing clustering successively over random subsets of the available data and evaluating an index which expresses the similarity of the successive partitions obtained. We present a method for automatically estimating by starting from the distribution of the similarity index. We investigate how the selection of the hierarchical clustering (HC) method, respectively, the similarity index, influences the estimation accuracy. The paper introduces a new similarity index based on a partition distance. The performance of the new index and that of other well-known indices are experimentally evaluated by comparing the "true" data partition with the partition obtained at each level of an HC tree. A case study is conducted with a publicly available Leukemia dataset.

Keywords and phrases

clustering stabilitynumber of clustershierarchical clustering methodssimilarity indicespartition-distancemicroarray data

Authors’ Affiliations

(1)
Institute of Signal Processing, Tampere University of Technology

Copyright

© Giurcăneanu and Tăbuş 2004