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Table 7 UCSC genome of 12 organisms

From: Novel methodologies for spectral classification of exon and intron sequences

OG

Clade

Genome

Assembly

Track

Table

Type

Number

1

Mammal

Human

Feb. 2009 (GRCh37/hg19)

UCSC Genes

knownGene

Exon

Intron

35685

532489

2

Mammal

Mouse

July 2007 (NCBI37/mm9)

UCSC Genes

knownGene

Exon

Intron

27452

43041

3

Mammal

Pig

Nov. 2009 (SGSC Sscrofa9.2/susScr2)

Ensembl Genes

ensGene

Exon

Intron

11499

113946

4

Vertebrate

Chicken

May 2006 (WUGSC 2.1/galGal3)

Ensembl Genes

ensGene

Exon

Intron

12045

57770

5

Vertebrate

Zebrafish

Jul. 2010 (Zv9/danRer7)

RefSeq Genes

refGene

Exon

Intron

7838

78776

6

Deuterostome

C. intestinalis

Mar. 2005 (JGI 2.1/ci2)

Ensembl Genes

ensGene

Exon

Intron

7360

86885

7

Deuterostome

S. purpuratus

Sep. 2006 (Baylor 2.1/strPur2)

Other RefSeq

xenoRefGene

Exon

Intron

4888

193451

8

Insect

D. melanogaster

Apr. 2006 (BDGP R5/dm3)

RefSeq Genes

refGene

Exon

Intron

37925

35403

9

Insect

A. mellifera

Jan. 2005 (Baylor 2.0/apiMel2)

Ensembl Genes

ensGene

Exon

Intron

21827

47605

10

Nematode

C. elegans

May 2008 (WS190/ce6)

RefSeq Genes

refGene

Exon

Intron

25360

37359

11

Nematode

C. japonica

Mar. 2008 (WUGSC 3.0.2/caeJap1)

Other RefSeq

xenoRefGene

Exon

Intron

7978

30958

12

Other

Sea hare

Sept. 2008 (Broad 2.0/aplCal1)

Other RefSeq

xenoRefGene

Exon

Intron

6914

431792

  1. Group: Genes and Gene Prediction Tracks. SL = 300 bases.